Feature updates and improvements​

General​

• Truncated verbose DEBUG log payloads to reduce heap pressure by @pditommaso in #1041

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.3...v1.33.4

Feature updates and improvements​

Access control​

• Automatically disabled SSO on organization deletion.
• Enabled SSO domain verification.
• Skipped showcase workspace enrollment for free-tier users.

Compute environments​

• Added an export configuration option to the compute environment menu.

General​

• Added inactive scope styles and a settings breadcrumb trail.
• Aligned workspace settings routes and page titles.
• Updated workspace settings hub copy and added E2E selectors.
• Updated the labels page and modal type copy.

Bug fixes​

Compute environments​

• Fixed the compute environment edit form to skip name copy-rename when opened.

Data Explorer​

• Prevented bucket actions from becoming stuck in the CREATING state.

Studios​

• Fixed the redirection route for the Save as new Studio action.

Feature updates and improvements​

Dependencies​

• Bumped nf-tower@1.17.6 by @pditommaso

Bug fixes​

Language features​

• Fixed formatting bug with map key expression by @bentsherman in #6893
• Fixed incorrect evaluation of secret process directive by @bentsherman in #6934
• Fixed params block in included module by @bentsherman in #6940
• Fixed params inclusion across modules in v2 parser by @bentsherman in #6766

Configuration​

• Fixed resolution of params in resolved config text by @jorgee in #7072

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.10.5

Feature updates and improvements​

Compute environments​

• Added force-delete for stuck compute environments.
• Added an optional description field to compute environments.
• Added region name search to the Seqera Compute drop-down mwnu.

Pipelines​

• Added Nextflow lineage integration with indexing, API, and UI for browsing workflow lineage data.
• Added cron action source for scheduled pipeline launches.
• Added effectiveCpus and effectiveMemory helpers on Task.

Monitoring​

• Added GPU metrics.

General​

• Added automatic breadcrumb navigation in the page header.

Bug fixes​

Compute environments​

• Fixed AWS Batch child jobs to terminate on workflow cancellation.
• Added hpc6id to the NVMe instance families allowlist.

Data Explorer​

• Fixed 403 errors to surface properly when adding a data-link to a GCS bucket.
• Fixed text overflow in the Data Explorer modal.

Pipelines​

• Fixed cpuShares to vCPU conversion in Task.getEffectiveCpus.
• Fixed parameters being hidden in the launch form when hidden=false is set in nextflow_schema.json.

Access control​

• Fixed user metadata reading for name, surname, and organization fields.
• Fixed organization claim reading to use the namespaced claim instead of user_metadata.
• Classified DCR-registered OIDC clients as third-party.
• Updated the default refresh token expiration in OIDC.
• Fixed POST /metering to allow regular authenticated users.

Studios​

• Fixed the Studio form to enable buttons after valid input.
• Fixed the Mount data button to display on the Studios form.

General​

• Fixed copy icon position by pinning it to the top-right corner in code blocks.

Feature updates and improvements​

Access control​

• Added an Enterprise AI OAuth client parameter.
• Added the ability to edit workspaces from the admin panel.
• Added configurable access and refresh token expiration per client.
• Refined the copy in the SSO management section.

Compute environments​

• Added a compute instance types selector for AWS Cloud Scheduler.
• Aggregated CPU-hours in shares to preserve fractional allocations.

Pipelines​

• Added data lineage indexing.
• Enabled the AI debug button.

Platform API​

• Persisted requested CPU and memory values on WorkflowLoad.

Bug fixes​

Access control​

• Fixed frontend Cloud SSO feature handling.
• Updated the default refresh token expiration in OIDC.

Datasets​

• Fixed the dataset name maximum length in the frontend to match the backend.

Pipelines​

• Resolved a race condition in the Lineage section of task details.

Feature updates and improvements​

Configuration​

• Renamed nextflow.preview.types feature flag to nextflow.enable.types by @pditommaso in #7067
• Added support for validation of collection params with record types by @bentsherman in #7025

General​

• Added -user-secret and -workspace-secret flags to nextflow launch by @rnaidu-seqera in #7040

Bug fixes​

Language features​

• Fixed runtime type reflection in nf-lang by @bentsherman in #7077

General​

• Fixed ANSI colors in error messages by @ewels in #7078

Dependencies​

• Bumped nf-tower@1.27.0

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.04.0

Feature updates and improvements​

Container building​

• Added BuildEnabled flag in MultiPlatformBuildService by @munishchouhan in #1030

General​

• Added missing configuration documentation by @munishchouhan in #1025
• Refined Docker Compose setup for Wave Lite by @munishchouhan in #1033
• Reduced Wave resource requirements in installation manifests by @bebosudo in #1028
• Updated documentation with minor clarity improvements by @christopher-hakkaart in #1034

Dependencies​

• Updated third-party dependency versions to latest stable by @cristianrcv in #1037

Bug fixes​

Container building​

• Added micromamba clean to v2 templates to reduce image size by @munishchouhan in #1038

Singularity​

• Fixed pixi Singularity template PATH environment by @munishchouhan in #1036

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.2...v1.33.3

Feature updates and improvements​

Access control​

• Added PKCE and consent flow support to OIDC, enabling Seqera Platform to act as an identity provider for OIDC/OAuth2 clients such as the Seqera AI CLI.

Bug fixes​

Pipelines​

• Fixed Nextflow timeline config generation to resolve NXF_TML_FILE via System.getenv instead of relying on shell variable expansion.
• Fixed the Browse button in the pipeline launch form being hidden for users with Launch, Connect, or View workspace roles by gating it on the correct permission instead of the Studios studio:execute grant.

Upgrade notes​

No breaking changes. Standard upgrade procedure applies.

Feature updates and improvements​

Language features​

• Removed unnecessary runtime checks with strict syntax by @bentsherman in #6539

Dependencies​

• Bumped nf-amazon@3.4.4
• Bumped nf-google@1.23.5
• Bumped nf-tower@1.17.5

Bug fixes​

Language features​

• Fixed false error with optional param by @bentsherman in #6811
• Fixed false error with multi-line tuple assignment in v2 parser by @bentsherman in #6786
• Fixed false error in v2 parser when including config file from HTTP URL by @bentsherman in #6753

AWS Batch​

• Added isCompleted check in getNumSpotInterruptions by @munishchouhan in #6806

General​

• Fixed LogsCheckpoint thread blocking shutdown for up to 90 seconds by @pditommaso in #6787

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.03.4-edge

New modules​

• Methurator (#3447)
  • A Python package designed to estimate CpGs saturation for DNA methylation sequencing data.
• riboWaltz (#3465)
  • Computes P-site offsets and performs quality control for ribosome profiling (Ribo-seq) data.

Feature updates and improvements​

• Add uv as an installation method in docs and README (#3493)
• Add Claude PostToolUse hook for code formatting (#3461)
• Bump default AI models for Anthropic (#3430)
• Remove HTML tags in generated module docs (#3509)
• Enable code review workflow to post comments on PRs (#3506)
• better header k/v spacing (#3471)
• Hide AI summary sections when simple_output is enabled (#3500)
• export_plots_timeout: Add docs and increase default to 60s (#3433)

Module updates​

• Clarify RSeQC bam_stat proper pairs column title (#3526)
• Fix mosdepth coverage in general stats if key is missing (#3432)
• fastp: Add limits, update color scale of % PF/% Adapter (#3454)
• fastp: Pick up version number for fasterp runs (#3392)
• Freyja: Use safe alternative to eval() (#3531)

Fixes​

• Fix heatmap axis labels not updating when toggling clustering (#3487)
• Fix bug: Toggling highlighting for AI summary sample names didn't work (#3455)
• fix table scroll styling with sticky headers (#3437)

Module fixes​

• Fix sample name cleaning in CheckM and CheckM2 modules (#3464)
• CrosscheckFingerprints: Fix bug due to overwriting row_number variable (#3458)
• Porechop: Fix bug with "End Trimmed Percent" denominator (#3456)
• Fix incorrect plot title in umicollapse module (#3446)
• SNPsplit: Fix module datetime serialization error (#3444)

Infrastructure and packaging​

• Switch from pre-commit to prek (#3467)

New Contributors​

• @CelinePrakash made their first contribution in https://github.com/MultiQC/MultiQC/pull/3458
• @nictru made their first contribution in https://github.com/MultiQC/MultiQC/pull/3487
• @drbh made their first contribution in https://github.com/MultiQC/MultiQC/pull/3392

Full Changelog: https://github.com/MultiQC/MultiQC/compare/v1.33...v1.34